My major contribution to this chapter was a study of amino acid surface preferences in globular proteins. This work was first presented at the 1988 ACA meeting. All is explained in the figures below:
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The Aij value measures the preference of each type of amino acid sidechain
to share surface area with any other type. A value of 1.0 is neutral; greater
than one is a preference. The amino acids are sorted by their preference
to water. Single letter codes are employed, and color-coded according to
class. Additional codes are 'B' for backbones, 'O' for water, 'X' for any
heteroatom, 'Z' for chain terminii (the N,CA,C,O atoms were considered 'B',
glycine treated separately). 'Cs and Ch refer to disulphides and free sulphydryl
forms.