References
- Bernstein,F.C., Koetzle,T.F., Williams,G.J.B., Meyer,E.F.Jr., Brice,M.D., Rogers,J.R., Kennard,O., Shimanouchi,T., Tasumi,M. (1977). The Protein Data Bank: A Computer-based Archival File for Macromolecular Structures. J.Mol.Biol. 112,535-542.
- Bhat,T.N. and Cohen,G.H. (1984). OMITMAP: An Electron Density Map Suitable for the Examination of Errors in a Macromolecular Model. J.Appl.Cryst. 17,244-248.
- Branden,C. and Jones,A.T. (1990). Between objectivity and subjectivivity. Nature 343,687-689.
- Brunger,A.T., Kuriyan,J., and Karplus,M. (1987). Crystallographic R factor Refinement by Molecular Dynamics. Science 235,458-460.
- Brunger,A.T (1992a). X-PLOR. Version 3.1. A System for X-ray Crystallography and NMR. Yale University Press, New Haven.
- Brunger,A.T (1992b). The Free R value: a Novel Statistical Quantity for Assessing the Accuracy of Crystal Structures. Nature 355,472-474.
- Bowie,J.U., Luthy,R. and Eisenberg,D. (1992). A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure. Science 253, 164-170.
- Carson, M. and Bugg, C.E. (1988). Protein Crystal Graphics. Abstract G2, Proceedings of the Annual Meeting of the American Crystallographic Association.
- Carson, M. (1991). Ribbons 2.0. J.Appl.Cryst., 24:958-961.
- Carson, M. (1992). OMITMAP for UNIX. J.Appl.Cryst., 25:327-328.
- Carson,M, Bugg,C.E., DeLucas,L.J. and Narayana,S.V.L. (1994) Comparison of Homology Models to the Experimental Structure of a Novel Serine Protease. Acta cryst. D50:889-899.
- Cohen,G.H. (1993). GEOM - a program to assess the reliability of a protein model. J.Appl.Cryst. 26,495.
- Greer, J. (1988). Comparative modeling of proteins in the complement pathway. Abstract I3, Proceedings of the Annual Meeting of the American Crystallographic Association.
- Greer,J. (1990). Comparitive modeling methods. Application to the family of serine proteases. Proteins 7,317-334.
- Guss,J.M., Bartunik,H.D. and Freeman,H.C. (1992). Accuracy and Precision in Protein Structure Analysis: Restrained Least-Squares Refinement of the Structure of Poplar Plastocyanin at 1.33 A Resolution. Acta Cryst. B48,790-811.
- Hendrickson,W.A. (1980). Practical aspects of restrained refinement of protein structures.. Machin, P. A., Campbell, J. W., and Elder, M., eds. Refinement of protein structures, Proceedings of the Daresbury study weekend; 1980 november 15-16; Daresbury, England, 1981,1-8.
- Jones,T.A. (1978). A graphics model building and refinement system for macromolecules. J.Appl.Cryst. 11,268-272.
- Jones,T.A. and Thirup,S. (1986). Using known substructures in protein model building and crystallography. EMBO Journal 5,819-822.
- Jones,T.A., Bergdoll,M. and Kjeldgaard,M. (1989). O: A Macromolecule Modeling Environment. Crystallographic and Modeling Methods in Molecular Design edited by C.E.Bugg and S.E.Ealick. pp 189-199. Springer-Verlag, New York.
- Jones,T.A., Zou,J.-Y., Cowan,S.W., and Kjeldgaard,M. (1991). Improved Methods for Building Protein Models in Electron Density Maps and the Location of Errors in these Models. Acta cryst. A47,110-119.
- Lee,B. and Richards,F.M. (1971). The Interpretation of Protein Structures: Estimation of Static Accessibility. J.Mol.Biol. 55,379-400.
- Luthy,R., Bowie,J.U. and Eisenberg,D. (1992). Assessment of protein models with three-dimensional profiles. Nature 356, 83-85.
- Luzzati, V. (1952). Traitement statistique des erreurs dans la determination des structures cristallines. Acta Crystallogr. 5, 802-810.
- Morris,A.L., MacArthur,M.W., Hutchinson,E.G. and Thornton,J. (1992). Stereochemical Quality of Protein Structure Coordinates. Proteins 12,345-364.
- Narayana,S.V.L., Carson,M., El-Kabbani,O., Kilpatrick,J.M., Moore,D., Chen,X., Bugg,C.E., Volanakis,J.E. and DeLucas,L.J. (1994). Structure of Human Factor D, a Complement System. Protein at 2.0 A Resolution J.Mol.Biol. 235,695-708.
- Novotny,J., Bruccoleri,R. and Karplus,M. (1984). An analysis of incorrectly folded protein models. Implications for structure predictions. J.Mol.Biol. 177,787-818.
- Press,W.H., Teukolsky,S.A., Vetterling,W.T. and Flannery,B.P. Numerical Recipes in C. The Art of Scientific Computing. Cambridge University Press, New York.
- Ponder,J.W. and Richards,F.M. (1987). Tertiary Templates for Proteins: Use of Packing Criteria in the Enumeration of Allowed Sequences for Different Structural Classes J.Mol.Biol. 193,775-791.
- Ramachandran, G. N., Ramakrishnan, C. and Sasisekharan, V. (1963). Stereochemistry of Polypeptide Chain Configurations. J. Mol. Biol. 7, 95-99.
- Rao,J.K.M. (1991). Where are the poorly fit and wrongly fit regions in the electron density maps of your macromolecular structure. Proceeding of the ACA annual meeting, Abstract G07, p.35.
- Read,R. (1986) Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Cryst. A42,140-149.
- Sevcik,J., Hill,C.P., Dauter,Z. and Wilson,K.S. (1993). Complex of Ribonuclease from Streptomyces aureofaciens with 2'-GMP at 1.7 A Resolution. Acta Cryst. D49,257-271.
- Smith,C., Carson,M., van der Woerd,M., Chen,J., Ischiropolous,H., and Beckman,J. (1992). Crystal Structure of the Reaction Product of Peroxynitrite with Bovine Cu,Zn Superoxide Dismutase. Arch.Biochem.Biophys. 299,350-355.
- Tainer,J.A., Getzoff,E.D., Beem,K.M., Richardson,J.S. and Richardson,D.C. (1982). Determination and analysis of the 2 angstrom structure of copper, zinc superoxide dismutase J.Mol.Biol. 160,181-217.
-